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Align REBASE::M.Cpi1782I to PF01170 (UPF0020)

REBASE::M.Cpi1782I has 509 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    4.9e-11   28.8   0.3    1.5e-09   23.9   0.3    2.4  1  REBASE::M.Cpi1782I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Cpi1782I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.3   1.5e-09   1.5e-09      19     131 ..     192     286 ..     186     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.5e-09
                         HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-G.GGEEEE CS
             UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvg.dliefs 108
                          l +l +++pg+++ DP CGsG++lI  a                             + lyg +++ +  + ar N    + +   ie+ 
  REBASE::M.Cpi1782I 192 LLAKLMDAQPGDRICDPACGSGSLLIKVANEIDGKN----------------------YALYGQENNGSTWALARMNMFLHEQDnAVIEWG 260
                         577899********************8775543333......................679999999999999999987655541567886 PP

                         E.--GGG--STTS..---EEEE---- CS
             UPF0020 109 q.adaakLrlkeg..evdvivtnpPY 131
                         + +++ +L++k++  ++d++v+npP+
  REBASE::M.Cpi1782I 261 DtLNHPQLKEKDSlmKFDIVVANPPF 286
                         52678899955555689999999998 PP



Or compare REBASE::M.Cpi1782I to CDD or PaperBLAST