REBASE::M.Cpi1782I has 509 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.6e-11 28.9 0.3 1.1e-09 24.4 0.3 2.4 1 REBASE::M.Cpi1782I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cpi1782I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.4 0.3 1.1e-09 1.1e-09 19 131 .. 192 286 .. 186 305 .. 0.79
Alignments for each domain:
== domain 1 score: 24.4 bits; conditional E-value: 1.1e-09
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagv.gdliefs 108
l +l ++++g+++ DP CGsG++lI a + lyg +++ + + ar N + + ie+
REBASE::M.Cpi1782I 192 LLAKLMDAQPGDRICDPACGSGSLLIKVANEIDGKN----------------------YALYGQENNGSTWALARMNMFLHEQdNAVIEWG 260
577899********************8775543333......................679999999999999999987655514567886 PP
UPF0020 109 q.adaakLrlkeg..evdvivtnpPY 131
+ +++ +L++k++ ++d++v+npP+
REBASE::M.Cpi1782I 261 DtLNHPQLKEKDSlmKFDIVVANPPF 286
526788999555556999******98 PP
Or compare REBASE::M.Cpi1782I to CDD or PaperBLAST