PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Csp16704I to PF01170 (UPF0020)

REBASE::M.Csp16704I has 497 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    7.6e-13   34.7   0.0    2.1e-12   33.3   0.0    1.7  1  REBASE::M.Csp16704I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Csp16704I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   2.1e-12   2.1e-12      16     193 ..     182     365 ..     180     368 .. 0.67

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 2.1e-12
                          HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHHHHHHHH..HHHTT-G CS
              UPF0020  16 LAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear.aelklygsDldrrvvqgareN..aekagvg 102
                          L +a+v++ + k+ e+++DP CGs ++l+E  l   +      r ++ ++   +ee +  ++  l+g ++ +   + +  N  +++ +  
  REBASE::M.Csp16704I 182 LVRAMVEVLDPKAKERIYDPACGSCGFLVESFLHILYED----RAKKKKANLSVEELEFlQNDALFGKEKTPLSYAMGVMNmiLHEVKSP 267
                          679***************************988766655....33444444444444443555599999999999999988333555556 PP

                          GGEEEEE-..-GGG--STTS---EEEE----------HHHH.HHHHHH.....HHHHHHHH-TT..-EEEEEESSHHHHHCC---ESEEE CS
              UPF0020 103 dliefsqa..daakLrlkegevdvivtnpPYGerlgskkal.ekLYse.....flrelkrvlrgggrlvlltsenkalekaleeralrkv 184
                          ++i+ +++  ++++++ ++++++vi++npP+G + +++ ++   + s+     fl+ + + l+++gr +++++e   +++  +  +++k 
  REBASE::M.Csp16704I 268 NIIKTNTLnkKITDIT-ENEKYEVILANPPFGGKEKDQIQNnFPIKSNatellFLQHILKSLKNNGRCAIVVPEGVLFQNSNAFVSVKKD 356
                          7777776411567777.8889**********97765554331222221112226777777777778888887777777766666666666 PP

                          EEEETTEEE CS
              UPF0020 185 keknvklgl 193
                           ++n +l++
  REBASE::M.Csp16704I 357 LLENFNLEC 365
                          666666665 PP



Or compare REBASE::M.Csp16704I to CDD or PaperBLAST