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Align REBASE::M.Csp209II to PF01170 (UPF0020)

REBASE::M.Csp209II has 504 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    3.4e-11   29.3   0.0    7.4e-11   28.2   0.0    1.6  1  REBASE::M.Csp209II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Csp209II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   7.4e-11   7.4e-11      20     145 ..     187     305 ..     182     343 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 7.4e-11
                         HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE- CS
             UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
                         +v+l++ + ge   DP CG+ ++ I a   +++          +++++ ++ +++++  + g +l +   + a  Na   g++  i++ + 
  REBASE::M.Csp209II 187 MVKLTKPEVGELCNDPACGTFGFMIAADRYVKEHN-------DMFALSDIQYSFQKHNAFTGCELVADTHRLAMMNAMIHGIDSDIKLADT 270
                         9**********************997765555555.......5679********************************************9 PP

                         -GGG--STTS---EEEE----------HHHH.HHHH CS
             UPF0020 111 daakLrlkegevdvivtnpPYGerlgskkal.ekLY 145
                            + + ++  +d+++tnpP+G + g +++  ++L+
  REBASE::M.Csp209II 271 LSNQGKSMH-GFDLVLTNPPFGTKQGGERTTrDDLT 305
                         999888555.7************9998888756664 PP



Or compare REBASE::M.Csp209II to CDD or PaperBLAST