REBASE::M.Csp209II has 504 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-11 29.7 0.0 5.8e-11 28.5 0.0 1.6 1 REBASE::M.Csp209II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Csp209II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.5 0.0 5.8e-11 5.8e-11 20 145 .. 187 305 .. 182 343 .. 0.84
Alignments for each domain:
== domain 1 score: 28.5 bits; conditional E-value: 5.8e-11
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
+v+l++ + ge DP CG+ ++ I a +++ +++++ ++ +++++ + g +l + + a Na g++ i++ +
REBASE::M.Csp209II 187 MVKLTKPEVGELCNDPACGTFGFMIAADRYVKEHN-------DMFALSDIQYSFQKHNAFTGCELVADTHRLAMMNAMIHGIDSDIKLADT 270
9***********************97766555555.......5679********************************************9 PP
UPF0020 111 daakLrlkegevdvivtnpPYGerlgskkal.ekLY 145
+ + ++ +d+++tnpP+G + g +++ ++L+
REBASE::M.Csp209II 271 LSNQGKSMH-GFDLVLTNPPFGTKQGGERTTrDDLT 305
999888555.7************9998888756664 PP
Or compare REBASE::M.Csp209II to CDD or PaperBLAST