REBASE::M.CthIV has 628 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-11 29.3 0.1 8.2e-11 28.1 0.0 1.6 2 REBASE::M.CthIV
Domain annotation for each sequence (and alignments):
>> REBASE::M.CthIV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.1 0.0 8.2e-11 8.2e-11 31 133 .. 326 427 .. 322 439 .. 0.74
2 ? -3.6 0.0 0.42 0.42 130 140 .. 467 477 .. 466 479 .. 0.87
Alignments for each domain:
== domain 1 score: 28.1 bits; conditional E-value: 8.2e-11
UPF0020 31 pllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear..aelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkege 121
++ D CGsG++lI + ++i + ll + ++ k++ ee ++ +e ++g+D+ + +v +ar N g + f++ + + + lk g
REBASE::M.CthIV 326 RIGDLCCGSGGFLIK---MLQKIEHYLLNKLTG-DKKQYEELFEqmKEHCFIGADNAPGMVLKARINMALHGAPKCPIFQTRNSLMNTrLKPGT 415
566778********6...566666555644444.5555566555345555******************99999887666665554433378889 PP
UPF0020 122 vdvivtnpPYGe 133
+d+i+tnpP+ +
REBASE::M.CthIV 416 FDAILTNPPFSK 427
*********976 PP
== domain 2 score: -3.6 bits; conditional E-value: 0.42
UPF0020 130 PYGerlgskka 140
PYG +lgsk++
REBASE::M.CthIV 467 PYGLSLGSKPD 477
*******9975 PP
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