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Align REBASE::M.CthIV to PF01170 (UPF0020)

REBASE::M.CthIV has 628 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-11   29.3   0.1      8e-11   28.1   0.0    1.6  2  REBASE::M.CthIV  


Domain annotation for each sequence (and alignments):
>> REBASE::M.CthIV  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0     8e-11     8e-11      31     133 ..     326     427 ..     322     440 .. 0.74
   2 ?   -3.6   0.0      0.41      0.41     130     140 ..     467     477 ..     466     479 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 8e-11
                      -EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH..HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS- CS
          UPF0020  31 pllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear..aelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkege 121
                      ++ D  CGsG++lI    + ++i + ll + ++  k++ ee ++  +e  ++g+D+ + +v +ar N    g  +   f++ +  + + lk g 
  REBASE::M.CthIV 326 RIGDLCCGSGGFLIK---MLQKIEHYLLNKLTG-DKKQYEELFEqmKEHCFIGADNAPGMVLKARINMALHGAPKCPIFQTRNSLMNTrLKPGT 415
                      566778********6...666666555644444.5555666665345555******************9999988776666665444347888* PP

                      --EEEE------ CS
          UPF0020 122 vdvivtnpPYGe 133
                      +d+i+tnpP+ +
  REBASE::M.CthIV 416 FDAILTNPPFSK 427
                      *********976 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.41
                      --------HHH CS
          UPF0020 130 PYGerlgskka 140
                      PYG +lgsk++
  REBASE::M.CthIV 467 PYGLSLGSKPD 477
                      *******9975 PP



Or compare REBASE::M.CthIV to CDD or PaperBLAST