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Align REBASE::M.DfaPA1I to PF01170 (UPF0020)

REBASE::M.DfaPA1I has 568 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.4e-16   46.8   0.0    2.5e-16   46.1   0.0    1.3  1  REBASE::M.DfaPA1I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.DfaPA1I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   2.5e-16   2.5e-16      20     148 ..     215     355 ..     210     408 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 2.5e-16
                        HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS............HHHHHHHHHHHH--..EEEEES-HHHHHHHHHHHH CS
            UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle............lkaeaeeearaelk..lygsDldrrvvqgareNae 97 
                        +  l + + g++++DP CG+G++l+ a +   +  +  +++ +              + a + ++++  l+  lyg D+d+ +v+ +  N+ 
  REBASE::M.DfaPA1I 215 MADLVRPQLGQRIVDPACGTGGFLLGAYQYIVTQLA--IKDGKQDlvpdedgfartsVAAGLTRKTQLILQesLYGYDIDATMVRLGLMNLM 304
                        667788999****************99887777664..44444446679999966664444444555333357******************* PP

                        HTT-GG.GEEEEE--GGG--STTS---EEEE----------HHHHHHHHHHH CS
            UPF0020  98 kagvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYsef 148
                          g+++  i++++   +  + +e+++d++++npP+  ++++   +e+L  ++
  REBASE::M.DfaPA1I 305 MHGIDEpHIDYQDTLSKGYN-EEAKYDIVLANPPFTGSIDKGDINENLQLAT 355
                        ****9835999999999999.888*****************99999986553 PP



Or compare REBASE::M.DfaPA1I to CDD or PaperBLAST