REBASE::M.Dsp293I has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-16 46.0 0.0 1.6e-15 43.4 0.0 2.3 3 REBASE::M.Dsp293I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Dsp293I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.4 0.0 1.6e-15 1.6e-15 18 133 .. 157 262 .. 153 270 .. 0.81
2 ? -2.1 0.0 0.14 0.14 148 178 .. 298 328 .. 291 335 .. 0.83
3 ? -3.6 0.0 0.41 0.41 96 115 .. 395 414 .. 368 420 .. 0.76
Alignments for each domain:
== domain 1 score: 43.4 bits; conditional E-value: 1.6e-15
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsq 109
a+vr+++ k+ge+++DP CG+G++l+ a ++ ++ e+e +e +yg+D+ +vv+ a N g+g++ + +
REBASE::M.Dsp293I 157 DAMVRVTKPKPGETIADPACGTGGFLLAARDYLTQTF----------SLDPDEREDLRERTFYGADIVDSVVRLAAMNMFLHGIGGQTTPVH 238
69************************97765555555..........33334444447777************************9988777 PP
UPF0020 110 adaakLr.lkegevdvivtnpPYGe 133
+ L +++ +d++++npP+G
REBASE::M.Dsp293I 239 REDS-LAkAPSRRFDIVLANPPFGV 262
5444.44477889***********6 PP
== domain 2 score: -2.1 bits; conditional E-value: 0.14
UPF0020 148 flrelkrvlrgggrlvlltaenkalekalee 178
fl+ + ++l+ ggr+++++++n +e+ ++e
REBASE::M.Dsp293I 298 FLQHIISMLKVGGRAAVVVPDNVLFEAGAGE 328
788888899999*********9999987766 PP
== domain 3 score: -3.6 bits; conditional E-value: 0.41
UPF0020 96 aekagvgdliefsqadaakL 115
++a ++d+i+++qad ++
REBASE::M.Dsp293I 395 MQEADLADFIQVYQADDRSQ 414
57888889999999887655 PP
Or compare REBASE::M.Dsp293I to CDD or PaperBLAST