REBASE::M.Ead53II has 516 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-13 37.2 0.0 2.3e-13 36.4 0.0 1.4 1 REBASE::M.Ead53II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Ead53II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.4 0.0 2.3e-13 2.3e-13 18 184 .. 181 350 .. 176 362 .. 0.76
Alignments for each domain:
== domain 1 score: 36.4 bits; conditional E-value: 2.3e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdl.ief 107
+ +v+l++ ++++++ DP +G+ ++l+ a+ ++ gl+r+ + + + ++ + g D+d+ +++ + N + gv++ i +
REBASE::M.Ead53II 181 RLMVELTKPTPQDVICDPASGTCGFLVAAGEHLRDHHNGLFRDATLN--------RHfHDEMFHGYDFDQTMLRIGSMNMQLHGVEGAdIRY 264
669**********************************9999876543........22355569**********************9853888 PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkalekLYs.........eflrelkrvlrgggrlvlltaenkalekaleeralrkv 184
++ + + +++ +i++npP+ +l+ + + ++L f+ + + l+ ggr+++++++ + + ++ra+rk+
REBASE::M.Ead53II 265 RDSLSSSHGDDADKYSLILANPPFAGSLDYETTANDLLAivktkktelLFMALFLKLLKPGGRAAVIVPDGVLFGSSTAHRAIRKM 350
88666655577889**************9998888775411111221235555666677777777777777777666666666665 PP
Or compare REBASE::M.Ead53II to CDD or PaperBLAST