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Align REBASE::M.Eco13452II to PF01170 (UPF0020)

REBASE::M.Eco13452II has 544 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
      2e-11   30.1   0.1    1.7e-10   27.1   0.0    2.3  2  REBASE::M.Eco13452II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco13452II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0     0.085     0.085      65      88 ..      40      63 ..      11      69 .. 0.77
   2 !   27.1   0.0   1.7e-10   1.7e-10      20     140 ..     174     318 ..     168     339 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.085
                          HHHHHHHHHHHH--EEEEES-HHH CS
               UPF0020 65 lkaeaeeearaelklygsDldrrv 88
                          ++++ e++ +++ +++g+D+++r 
  REBASE::M.Eco13452II 40 MLDTQEQRDEKRKQIAGIDFKPRF 63
                          67777888889999*****99886 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.7e-10
                           HHHHTT..--TTS-EEETT-TTSHHHH...HHHHHHTT--TTTT----SS..............HHHHHHHHHH.......HH--EEEE CS
               UPF0020  20 lvrlag..wkpgepllDPmCGsGtilI...Eaallganiapgllrefvle..............lkaeaeeear.......aelklygs 82 
                           +v++ +    +ge++ DP CG+G++l    E  l + +     + e  ++              l                ++  + g 
  REBASE::M.Eco13452II 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdL--------LvpwrnhvDNNMFHGY 254
                           555554114579*************9533355555555554444444444555555555544433........0444433233349*** PP

                           ES-HHHHHHHHHHHHHTT-GGG.EEEEE--GGG--.....STTS---EEEE----------HHH CS
               UPF0020  83 DldrrvvqgareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
                           D+d  +++ a  N+   gv+   i++++   +++      ++++ +++i++npP+  +l+++  
  REBASE::M.Eco13452II 255 DFDTTMLRIAAMNLIMHGVEAPdIHYQDTMSQSFStnfpqASKNAFNLILANPPFTGSLDEEDI 318
                           *******************97549999888877776776877889***********99998765 PP



Or compare REBASE::M.Eco13452II to CDD or PaperBLAST