REBASE::M.Eco13452II has 544 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-11 30.2 0.0 1.5e-10 27.2 0.0 2.3 2 REBASE::M.Eco13452II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco13452II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.0 0.078 0.078 65 88 .. 40 63 .. 12 69 .. 0.77
2 ! 27.2 0.0 1.5e-10 1.5e-10 20 140 .. 174 318 .. 168 344 .. 0.70
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 0.078
UPF0020 65 lkaeaeeearaelklygsDldrrv 88
++++ e++ +++ +++g+D+++r
REBASE::M.Eco13452II 40 MLDTQEQRDEKRKQIAGIDFKPRF 63
67777888889999*****99886 PP
== domain 2 score: 27.2 bits; conditional E-value: 1.5e-10
UPF0020 20 lvrlag..wkdgepllDPmCGsGtilI...Eaallganiapgllrefvye..............lkaeaeeear.......aelklygs 82
+v++ + +ge++ DP CG+G++l E l + + + e ++ l ++ + g
REBASE::M.Eco13452II 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdL--------LvpwrnhvDNNMFHGY 254
665554114579*************9533355555555554444444444555555555544433........0444333233349*** PP
UPF0020 83 DldrrvvqgareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
D+d +++ a N+ gv+ i++++ +++ ++++ +++i++npP+ +l+++
REBASE::M.Eco13452II 255 DFDTTMLRIAAMNLIMHGVEAPdIHYQDTMSQSFStnfpqASKNAFNLILANPPFTGSLDEEDI 318
*******************97549998888877776666877889***********99998765 PP
Or compare REBASE::M.Eco13452II to CDD or PaperBLAST