PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Eco644II to PF01170 (UPF0020)

REBASE::M.Eco644II has 501 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    3.8e-14   39.0   0.0    7.9e-14   37.9   0.0    1.5  1  REBASE::M.Eco644II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco644II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   7.9e-14   7.9e-14      18     171 ..     184     336 ..     180     357 .. 0.72

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 7.9e-14
             UPF0020  18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
                         + +v + + k ge+++DP CG+G++l  a   ++n +            + +  ++  ++++ g+++++     a +N    g++  ++++
  REBASE::M.Eco644II 184 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNKY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQIR 263
                         67999*********************76666666666...........2344445556777*******99888899999888888888888 PP

             UPF0020 109 qad..aakLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
                           +  ++ L  ++++ dvivtnpP+G   ++        + + ++  + fl+ + +vl+++gr+++++++   
  REBASE::M.Eco644II 264 HDNtlNKPLSSRDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 336
                         766114566678889***********65333111111113344555666777888888888888887776655 PP



Or compare REBASE::M.Eco644II to CDD or PaperBLAST