REBASE::M.Eco9026III has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-13 37.2 0.0 2.9e-13 36.1 0.0 1.6 1 REBASE::M.Eco9026III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Eco9026III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.1 0.0 2.9e-13 2.9e-13 18 171 .. 172 324 .. 168 345 .. 0.72
Alignments for each domain:
== domain 1 score: 36.1 bits; conditional E-value: 2.9e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
+ +v + + k ge+++DP CG+G++l a ++n + + + ++ ++++ g+++++ a +N g++ ++
REBASE::M.Eco9026III 172 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNKY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQ 249
67999*********************76666666666...........2344445556777*******998889999999999888888 PP
UPF0020 107 fsqada..akLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
++ + + L +++ dvivtnpP+G ++ + + ++ + fl+ + +vl+++gr+++++++
REBASE::M.Eco9026III 250 IRHDNTlnKPLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMKTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 324
88766511556677779***********65433111111113334555667778888888888888887776655 PP
Or compare REBASE::M.Eco9026III to CDD or PaperBLAST