REBASE::M.EcoD181II has 410 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.5e-14 37.8 0.3 1.3e-09 24.1 0.0 3.1 3 REBASE::M.EcoD181II
Domain annotation for each sequence (and alignments):
>> REBASE::M.EcoD181II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.1 0.0 1.3e-09 1.3e-09 26 47 .. 63 84 .. 57 109 .. 0.91
2 ! 9.5 0.0 4e-05 4e-05 103 135 .. 200 232 .. 140 248 .. 0.84
3 ? 0.3 0.0 0.027 0.027 70 102 .. 264 296 .. 234 321 .. 0.69
Alignments for each domain:
== domain 1 score: 24.1 bits; conditional E-value: 1.3e-09
UPF0020 26 wkdgepllDPmCGsGtilIEaa 47
k+g+++lDP+CGsGt+l Eaa
REBASE::M.EcoD181II 63 CKKGDRILDPFCGSGTVLREAA 84
689******************9 PP
== domain 2 score: 9.5 bits; conditional E-value: 4e-05
UPF0020 103 dliefsqadaakLrlkegevdvivtnpPYGerl 135
+ie+++ da++++++++ +d +vt pPY +
REBASE::M.EcoD181II 200 CKIEARVGDARAINEADNTFDYLVTSPPYINVF 232
57999*********9999***********7655 PP
== domain 3 score: 0.3 bits; conditional E-value: 0.027
UPF0020 70 eeearaelklygsDldrrvvqgareNaekagvg 102
+++ ++ y++D+ + v+++r +a+++
REBASE::M.EcoD181II 264 RQNRYMTVVQYCMDIAQFFVEAGRVLKDNAKIT 296
22222555599*****99999999877777765 PP
Or compare REBASE::M.EcoD181II to CDD or PaperBLAST