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Align REBASE::M.EcoEI to PF01170 (UPF0020)

REBASE::M.EcoEI has 490 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-14   40.2   0.0    3.1e-14   39.2   0.0    1.5  1  REBASE::M.EcoEI  


Domain annotation for each sequence (and alignments):
>> REBASE::M.EcoEI  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   3.1e-14   3.1e-14      18     134 ..     172     279 ..     168     340 .. 0.76

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 3.1e-14
                      HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE-- CS
          UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqad 111
                      + +v++ + k ge+++DP CG+G++l  a   +++ +            ++ e ++  ++++yg+++++     + +N    g++  ++++  +
  REBASE::M.EcoEI 172 RFMVNRIDPKLGESIMDPACGTGGFLACAFDHVKDNY-----------VKTTEDHKTLQQQIYGVEKKQLPHLLCTTNMLLHGIEVPVQIRHDN 254
                      679***********************55544444444...........2344445557777********9999999999999999999998866 PP

                      G..GG--STTS---EEEE------- CS
          UPF0020 112 a..akLrlkegevdvivtnpPYGer 134
                         + L   +++vdvivtnpP+G  
  REBASE::M.EcoEI 255 TlnKPLSSWDEQVDVIVTNPPFGGT 279
                      511456677779***********54 PP



Or compare REBASE::M.EcoEI to CDD or PaperBLAST