REBASE::M.EcoG089III has 715 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-10 27.5 0.0 2.1e-10 26.7 0.0 1.3 1 REBASE::M.EcoG089III
Domain annotation for each sequence (and alignments):
>> REBASE::M.EcoG089III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.7 0.0 2.1e-10 2.1e-10 29 134 .. 358 462 .. 350 487 .. 0.70
Alignments for each domain:
== domain 1 score: 26.7 bits; conditional E-value: 2.1e-10
UPF0020 29 gepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr. 116
+ ++ DP CGs ++ a + + + ++ k+e +++ ++ + g+D +r+v ar N g + f++ + +
REBASE::M.EcoG089III 358 DFRFCDPTCGSFGFGSVALSQIDKWI--DFKLVLADDKKESLKQKLRDCAFTGADAAPRMVMLARVNMALQGAPKAQIFYTDNSLTTNa 444
45899*****9888654444444444..3444445555555555557788*****************9988877665555544433334 PP
UPF0020 117 lkegevdvivtnpPYGer 134
lk +++d+i tnpP+G
REBASE::M.EcoG089III 445 LKPNSFDLICTNPPFGTP 462
56669***********75 PP
Or compare REBASE::M.EcoG089III to CDD or PaperBLAST