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Align REBASE::M.EcoGIV to PF01170 (UPF0020)

REBASE::M.EcoGIV has 501 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------         -----------
      2e-13   36.6   0.0    4.5e-13   35.5   0.0    1.5  1  REBASE::M.EcoGIV  


Domain annotation for each sequence (and alignments):
>> REBASE::M.EcoGIV  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.5e-13   4.5e-13      18     170 ..     184     335 ..     180     356 .. 0.71

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.5e-13
                       HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE- CS
           UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
                       + +v + + k ge+++DP CG+G++l  a   ++n +            + +  ++  ++++ g+++++     a +N    g++  ++++  
  REBASE::M.EcoGIV 184 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNKY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQIRHD 265
                       67999*********************66666666666...........2344444556777*******9988899999999999888888876 PP

                       -G..GG--STTS---EEEE----------........HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSH CS
           UPF0020 111 da..akLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltsenk 170
                       +   + L   +++ dvivtnpP+G   ++        + + ++  + fl+ + +vl+++gr+++++++  
  REBASE::M.EcoGIV 266 NTlnKPLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGT 335
                       6511556677779***********6533211111111333455556677777888888888887777655 PP



Or compare REBASE::M.EcoGIV to CDD or PaperBLAST