REBASE::M.EcoHBI has 544 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-11 30.2 0.1 1.1e-10 27.6 0.0 2.2 2 REBASE::M.EcoHBI
Domain annotation for each sequence (and alignments):
>> REBASE::M.EcoHBI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.9 0.0 0.12 0.12 65 87 .. 40 62 .. 14 68 .. 0.78
2 ! 27.6 0.0 1.1e-10 1.1e-10 20 140 .. 174 318 .. 168 344 .. 0.71
Alignments for each domain:
== domain 1 score: -1.9 bits; conditional E-value: 0.12
UPF0020 65 lkaeaeeearaelklygsDldrr 87
++++ e++ +++ +++g+D+++r
REBASE::M.EcoHBI 40 MLDTQEQRDEKRKQIAGIDFKPR 62
67777788889999*****9887 PP
== domain 2 score: 27.6 bits; conditional E-value: 1.1e-10
UPF0020 20 lvrlag..wkdgepllDPmCGsGtilI...Eaallganiapgllrefvye..............lkaeaeeearaelklygsDldrrvvqgar 93
+v++ + +ge++ DP CG+G++l E l + + + e ++ l++ ++++ ++ + g D+d +++ a
REBASE::M.EcoHBI 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRNHV-DNNMFHGYDFDTTMLRIAA 265
665554114579*************953325455555555444444444466666666665554444433332.34449************** PP
UPF0020 94 eNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
N+ gv+ i++++ +++ ++++ +++i++npP+ +l+++
REBASE::M.EcoHBI 266 MNLIMHGVEAPdIHYQDTMSQSFStnfpqASKNAFNLILANPPFTGSLDEEDI 318
********97549998888877776666877889***********99998765 PP
Or compare REBASE::M.EcoHBI to CDD or PaperBLAST