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Align REBASE::M.EcoHBI to PF01170 (UPF0020)

REBASE::M.EcoHBI has 544 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------         -----------
    1.9e-11   30.1   0.1    1.3e-10   27.4   0.0    2.2  2  REBASE::M.EcoHBI  


Domain annotation for each sequence (and alignments):
>> REBASE::M.EcoHBI  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.13      0.13      65      87 ..      40      62 ..      14      68 .. 0.78
   2 !   27.4   0.0   1.3e-10   1.3e-10      20     140 ..     174     318 ..     168     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.13
                      HHHHHHHHHHHH--EEEEES-HH CS
           UPF0020 65 lkaeaeeearaelklygsDldrr 87
                      ++++ e++ +++ +++g+D+++r
  REBASE::M.EcoHBI 40 MLDTQEQRDEKRKQIAGIDFKPR 62
                      66777778889999****99887 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 1.3e-10
                       HHHHTT..--TTS-EEETT-TTSHHHH...HHHHHHTT--TTTT----SS..............HHHHHHHHHHHH--EEEEES-HHHHHHHH CS
           UPF0020  20 lvrlag..wkpgepllDPmCGsGtilI...Eaallganiapgllrefvle..............lkaeaeeearaelklygsDldrrvvqgar 93 
                       +v++ +    +ge++ DP CG+G++l    E  l + +     + e  ++              l++ ++++  ++  + g D+d  +++ a 
  REBASE::M.EcoHBI 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRNHV-DNNMFHGYDFDTTMLRIAA 265
                       555554114579*************953335555555555444444444466666666665554333333322.34449************** PP

                       HHHHHTT-GGG.EEEEE--GGG--.....STTS---EEEE----------HHH CS
           UPF0020  94 eNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
                        N+   gv+   i++++   +++      ++++ +++i++npP+  +l+++  
  REBASE::M.EcoHBI 266 MNLIMHGVEAPdIHYQDTMSQSFStnfpqASKNAFNLILANPPFTGSLDEEDI 318
                       ********97549999888877776776877889***********99998765 PP



Or compare REBASE::M.EcoHBI to CDD or PaperBLAST