REBASE::M.EcoSanI has 544 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-11 30.2 0.1 1.1e-10 27.6 0.0 2.2 2 REBASE::M.EcoSanI Domain annotation for each sequence (and alignments): >> REBASE::M.EcoSanI # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 0.0 0.12 0.12 65 87 .. 40 62 .. 14 68 .. 0.78 2 ! 27.6 0.0 1.1e-10 1.1e-10 20 140 .. 174 318 .. 168 344 .. 0.71 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.12 UPF0020 65 lkaeaeeearaelklygsDldrr 87 ++++ e++ +++ +++g+D+++r REBASE::M.EcoSanI 40 MLDTQEQRDEKRKQIAGIDFKPR 62 67777788889999*****9887 PP == domain 2 score: 27.6 bits; conditional E-value: 1.1e-10 UPF0020 20 lvrlag..wkdgepllDPmCGsGtilI...Eaallganiapgllrefvye..............lkaeaeeearaelklygsDldrrvvqga 92 +v++ + +ge++ DP CG+G++l E l + + + e ++ l++ ++++ ++ + g D+d +++ a REBASE::M.EcoSanI 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRNHV-DNNMFHGYDFDTTMLRIA 264 665554114579*************953325455555555444444444466666666665554444433332.34449************* PP UPF0020 93 reNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140 N+ gv+ i++++ +++ ++++ +++i++npP+ +l+++ REBASE::M.EcoSanI 265 AMNLIMHGVEAPdIHYQDTMSQSFStnfpqASKNAFNLILANPPFTGSLDEEDI 318 *********97549998888877776666877889***********99998765 PP
Or compare REBASE::M.EcoSanI to CDD or PaperBLAST