REBASE::M.Ega163II has 486 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4e-11 29.1 0.0 7.9e-11 28.1 0.0 1.4 1 REBASE::M.Ega163II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Ega163II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.1 0.0 7.9e-11 7.9e-11 19 192 .. 172 347 .. 167 351 .. 0.80
Alignments for each domain:
== domain 1 score: 28.1 bits; conditional E-value: 7.9e-11
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgd.liefs 108
+v l ++++++ DP Gs ++l+ a +++ p l+ ++ + + ++ + g D+d+ +++ + N gv++ +i+++
REBASE::M.Ega163II 172 MMVDLMAPTPQDTISDPAMGSAGFLVAASEYVRKHHPELF-------LDSILSKHYHNNMFHGNDMDSTMLRIGAMNMMLHGVDNpQIKYQ 255
699999******************************9888.......6666666667778***********************98357777 PP
UPF0020 109 qadaa.kLrlkegevdvivtnpPYGerlgskkalekLYse.........flrelkrvlrgggrlvlltaenkalekaleeralrkvkeknv 189
+ + +L+ ++++ ++++npP+ +l+ + ++L + fl+ + r l+ ggr+++++++ + + +++++rk ++n
REBASE::M.Ega163II 256 DSLSQdNLE--REKYSLVLANPPFKGSLDYDTTANDLLASiktkktellFLTLFLRTLKPGGRAAVIVPDGVLFGSSKAHKDIRKEIVENN 344
765541455..558**************999888888665222223333667788888888888888888888888888888888887777 PP
UPF0020 190 klg 192
kl+
REBASE::M.Ega163II 345 KLD 347
666 PP
Or compare REBASE::M.Ega163II to CDD or PaperBLAST