REBASE::M.EsaWC2II has 428 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-10 27.5 0.1 2.1e-09 23.5 0.0 2.4 3 REBASE::M.EsaWC2II
Domain annotation for each sequence (and alignments):
>> REBASE::M.EsaWC2II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.5 0.0 2.1e-09 2.1e-09 10 54 .. 54 97 .. 48 135 .. 0.77
2 ? 1.0 0.0 0.016 0.016 110 132 .. 218 240 .. 212 249 .. 0.88
3 ? -3.7 0.0 0.44 0.44 150 174 .. 294 318 .. 292 333 .. 0.64
Alignments for each domain:
== domain 1 score: 23.5 bits; conditional E-value: 2.1e-09
UPF0020 10 apLketLAaalvrlagwkdgepllDPmCGsGtilIEaallgania 54
++ +++L al+r a + +g++ lDP+ GsGt+lIE a lg ++
REBASE::M.EsaWC2II 54 GQFSPQLVEALLR-AYAAPGSVVLDPFMGSGTVLIESARLGLPVY 97
6677888888886.7899********************9998877 PP
== domain 2 score: 1.0 bits; conditional E-value: 0.016
UPF0020 110 adaakLrlkegevdvivtnpPYG 132
da++++l++g +d +++ pPY
REBASE::M.EsaWC2II 218 GDARAMPLSDGTIDFVLSSPPYI 240
58889999999***********5 PP
== domain 3 score: -3.7 bits; conditional E-value: 0.44
UPF0020 150 relkrvlrgggrlvlltaenkalek 174
el rv+ +++r++l++ ++++ k
REBASE::M.EsaWC2II 294 AELRRVCTESARILLILGRESKVHK 318
5778888888887777655555444 PP
Or compare REBASE::M.EsaWC2II to CDD or PaperBLAST