REBASE::M.Fhi13514I has 755 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-15 43.6 0.1 6.1e-15 41.5 0.0 2.1 2 REBASE::M.Fhi13514I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Fhi13514I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 41.5 0.0 6.1e-15 6.1e-15 19 138 .. 319 477 .. 313 491 .. 0.77
2 ? -3.3 0.1 0.34 0.34 73 95 .. 608 630 .. 592 666 .. 0.53
Alignments for each domain:
== domain 1 score: 41.5 bits; conditional E-value: 6.1e-15
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye...............................lkaeaeeear... 74
+v + + ++ge+ DP CGsG++lI a ++ + + + e l +ae +++
REBASE::M.Fhi13514I 319 FMVDVLDPQEGETVCDPCCGSGGFLIKAFEFVRAKIEVEIHLAKEEikkqyyteeyekasekiklsiddkvsdlfskL--NAELDINnsk 406
699999********************998777776654444333337779999**********************652..4444444334 PP
UPF0020 75 .....aelk...lygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgsk 138
+ ++g D ++r+ ++a+ N g g+ + +++ e+ +dvi+tnpP+G r+++
REBASE::M.Fhi13514I 407 srlrvL--SydcIFGTDANPRMSRTAKMNMIMHGDGHGGVHHNDGLLNVNgIFENRFDVILTNPPFGARVEKS 477
344333..2569*****************998887766555555566666655679*************9876 PP
== domain 2 score: -3.3 bits; conditional E-value: 0.34
UPF0020 73 araelklygsDldrrvvqgareN 95
+ +e++++ + +++v++ +
REBASE::M.Fhi13514I 608 ETREYQNITKNVEKKIVTKYKLQ 630
33444444445555554433322 PP
Or compare REBASE::M.Fhi13514I to CDD or PaperBLAST