REBASE::M.Ftu2015II has 495 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4e-12 32.3 0.1 2.6e-10 26.4 0.1 2.7 2 REBASE::M.Ftu2015II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Ftu2015II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.4 0.1 2.6e-10 2.6e-10 17 131 .. 191 287 .. 186 308 .. 0.61
2 ? -3.0 0.0 0.27 0.27 147 179 .. 318 350 .. 316 358 .. 0.78
Alignments for each domain:
== domain 1 score: 26.4 bits; conditional E-value: 2.6e-10
UPF0020 17 AaalvrlagwkdgepllDPmCGsGtilIEaall.ganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdli 105
++ l +l ++k+g+ ++DP CGsG++lI aa g+n ++ +e++ ++ +l+ ++++ N+ + ++gd+i
REBASE::M.Ftu2015II 191 SSLLAMLVQAKEGDEIYDPTCGSGSLLIKAAKEiGSNNFAIYG-----------QERNSTTHSLCRMNMFLH-----DINDANIQLGDTI 264
566889999**********************751555553333...........222223333444443333.....3345555555555 PP
UPF0020 106 efsq.adaakLrlkegevdvivtnpPY 131
+++ kL+ ++dv+v+npP+
REBASE::M.Ftu2015II 265 RNPRiLENDKLK----KFDVVVANPPF 287
443303334444....67888888887 PP
== domain 2 score: -3.0 bits; conditional E-value: 0.27
UPF0020 147 eflrelkrvlrgggrlvlltaenkalekaleer 179
+f + + l+++gr+++++++ + a+e +
REBASE::M.Ftu2015II 318 AFIQHMLASLNESGRMAVVVPHGVLFRGAAEGK 350
577888888999999999999888887777655 PP
Or compare REBASE::M.Ftu2015II to CDD or PaperBLAST