PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Gel16401I to PF01170 (UPF0020)

REBASE::M.Gel16401I has 496 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    3.9e-12   32.4   0.0    2.1e-10   26.7   0.0    2.7  2  REBASE::M.Gel16401I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Gel16401I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.1e-10   2.1e-10      18     136 ..     157     268 ..     153     274 .. 0.77
   2 !    2.2   0.0     0.007     0.007     147     191 ..     300     345 ..     293     350 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.1e-10
                          HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-G.GGEE CS
              UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvg.dlie 106
                           a+v +   kpge++ DP CG+G++l+ a     +  p +++++          +  ++  + g +l ++  + +  N+   g+g d  +
  REBASE::M.Gel16401I 157 QAIVDVIAPKPGETISDPACGTGGFLLAAHDSIVSKHPHMTKTE---------LKGLKQGTFKGWELVQATARLCAMNLMLHGIGsDDSD 237
                          689999999******************88776666666555322.........2222455599*******************99833455 PP

                          EEE--GGG--.STTS---EEEE--------- CS
              UPF0020 107 fsqadaakLr.lkegevdvivtnpPYGerlg 136
                          +  +   +L   + + +d+i+tnpP+G++ +
  REBASE::M.Gel16401I 238 LPLLVSDSLAaDPGDRFDIILTNPPFGKKSS 268
                          5555555666446669***********9865 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.007
                          HHHHHHHHH-TT..-EEEEEESSHHHHHCC---.ESEEEEEEETTE CS
              UPF0020 147 eflrelkrvlrgggrlvlltsenkalekaleer.alrkvkeknvkl 191
                          +f + +k  l+++gr+++++++n  +e  ++e  + +  +e nv+ 
  REBASE::M.Gel16401I 300 NFIQHVKTLLKQHGRAAVVVPDNVLFEGGAGETiRRKLLHECNVHT 345
                          588999*********************9999987777788888875 PP



Or compare REBASE::M.Gel16401I to CDD or PaperBLAST