REBASE::M.Hal5920I has 490 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.3e-13 34.4 0.0 1.8e-12 33.5 0.0 1.5 1 REBASE::M.Hal5920I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Hal5920I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.5 0.0 1.8e-12 1.8e-12 18 134 .. 172 279 .. 168 340 .. 0.75
Alignments for each domain:
== domain 1 score: 33.5 bits; conditional E-value: 1.8e-12
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
+ +v++ k ge+++DP CG+G++l a +++ + ++ e ++ ++++ g+++++ + +N g++ ++++
REBASE::M.Hal5920I 172 RFMVNRIAPKLGESIMDPACGTGGFLACAFDHVKEHY-----------VKTTEDHKTLQQQIHGVEKKQLPHLLCTTNMLLHGIEVPVQIR 251
6799999*******************55544444444...........2344455557777*******99999999999999999999998 PP
UPF0020 109 qada..akLrlkegevdvivtnpPYGer 134
+ + L +++ dvi+tnpP+G
REBASE::M.Hal5920I 252 HDNTlnKPLSSWDEQLDVIITNPPFGGT 279
866511456677779***********54 PP
Or compare REBASE::M.Hal5920I to CDD or PaperBLAST