REBASE::M.Hpy30VII has 545 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.3e-10 25.4 0.2 3.5e-09 22.7 0.0 2.4 2 REBASE::M.Hpy30VII
Domain annotation for each sequence (and alignments):
>> REBASE::M.Hpy30VII
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.6 0.0 0.098 0.098 131 158 .. 81 108 .. 79 126 .. 0.81
2 ! 22.7 0.0 3.5e-09 3.5e-09 78 140 .. 160 221 .. 132 238 .. 0.87
Alignments for each domain:
== domain 1 score: -1.6 bits; conditional E-value: 0.098
UPF0020 131 YGerlgskkalekLYseflrelkrvlrg 158
Y +rl++ +lekL s+ +el++ +r+
REBASE::M.Hpy30VII 81 YLKRLENSSDLEKLGSSYEEELSNTTRN 108
999***********99999999998876 PP
== domain 2 score: 22.7 bits; conditional E-value: 3.5e-09
UPF0020 78 klygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskka 140
++yg D d+ +++ +++ ++ d ++ q+d+ +L+ + ++d i tnpP+G++ +++++
REBASE::M.Hpy30VII 160 NIYGYDTDAFAIALTKKRIKERYHLDCPNIMQKDFLNLK-HTPQFDCIFTNPPWGKKYNQNQK 221
49*************************************.8889************9988764 PP
Or compare REBASE::M.Hpy30VII to CDD or PaperBLAST