REBASE::M.HspRAC07I has 490 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-10 26.8 0.0 4.5e-10 25.7 0.0 1.5 1 REBASE::M.HspRAC07I
Domain annotation for each sequence (and alignments):
>> REBASE::M.HspRAC07I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.7 0.0 4.5e-10 4.5e-10 19 132 .. 174 279 .. 169 284 .. 0.79
Alignments for each domain:
== domain 1 score: 25.7 bits; conditional E-value: 4.5e-10
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNa..ekagvgdlie 106
+v + + + ge+ +DP G+G++l+ a ++ + + e ++ +++++g+++++ + +N+ + +v i
REBASE::M.HspRAC07I 174 FMVDMVNPQLGETVFDPATGTGGFLVCAIEHLRKQV------------QSTEDDTVLQQSIRGVEKKQLPHMLCVTNLllHGVEVPSNIR 251
5999**********************8877666666............566777778888******987666666666115555566777 PP
UPF0020 107 fsqadaakLr..lkegevdvivtnpPYG 132
+ a+ Lr + + vdv++tnpP+G
REBASE::M.HspRAC07I 252 HDNTLARPLRevTQADRVDVVLTNPPFG 279
77888999998766669**********9 PP
Or compare REBASE::M.HspRAC07I to CDD or PaperBLAST