PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.HspRAC07I to PF01170 (UPF0020)

REBASE::M.HspRAC07I has 490 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    2.8e-10   26.3   0.0    6.3e-10   25.2   0.0    1.5  1  REBASE::M.HspRAC07I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.HspRAC07I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   6.3e-10   6.3e-10      19     132 ..     174     279 ..     169     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 6.3e-10
                          HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHH..HHTT-GGGEE CS
              UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNa..ekagvgdlie 106
                           +v + + + ge+ +DP  G+G++l+ a    ++ +            +  e ++  +++++g+++++     + +N+  +  +v   i 
  REBASE::M.HspRAC07I 174 FMVDMVNPQLGETVFDPATGTGGFLVCAIEHLRKQV------------QSTEDDTVLQQSIRGVEKKQLPHMLCVTNLllHGVEVPSNIR 251
                          5999**********************8876666666............556677777888******986666666666115555666777 PP

                          EEE--GGG--..STTS---EEEE----- CS
              UPF0020 107 fsqadaakLr..lkegevdvivtnpPYG 132
                            +  a+ Lr   + + vdv++tnpP+G
  REBASE::M.HspRAC07I 252 HDNTLARPLRevTQADRVDVVLTNPPFG 279
                          77888999998766669**********9 PP



Or compare REBASE::M.HspRAC07I to CDD or PaperBLAST