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Align REBASE::M.Kpn0080II to PF01170 (UPF0020)

REBASE::M.Kpn0080II has 489 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    1.2e-12   34.0   0.0    2.6e-12   32.9   0.0    1.5  1  REBASE::M.Kpn0080II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Kpn0080II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.6e-12   2.6e-12      18     170 ..     172     323 ..     168     344 .. 0.71

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.6e-12
                          HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEE CS
              UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
                          + +v + + k ge+++DP CG+G++l  a   ++n +            + +  ++  ++++ g+++++     a +N    g++  +++
  REBASE::M.Kpn0080II 172 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNNY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQI 250
                          67999*********************77666666666...........2334444556777*******9988899999999999888888 PP

                          EE--G..GG--STTS---EEEE----------........HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSH CS
              UPF0020 108 sqada..akLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltsenk 170
                          +  +   + L   +++ +vivtnpP+G   ++        + + ++  + fl+ + +vl+++gr+++++++  
  REBASE::M.Kpn0080II 251 RHDNTlnKPLSSWDEQLNVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGT 323
                          87665115566677799**********6533211111111333455556677777888888888887777655 PP



Or compare REBASE::M.Kpn0080II to CDD or PaperBLAST