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Align REBASE::M.Kpn62629I to PF01170 (UPF0020)

REBASE::M.Kpn62629I has 544 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    1.5e-11   30.5   0.1    1.1e-10   27.7   0.0    2.2  2  REBASE::M.Kpn62629I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Kpn62629I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0     0.098     0.098      65      87 ..      40      62 ..      12      69 .. 0.77
   2 !   27.7   0.0   1.1e-10   1.1e-10      20     139 ..     174     317 ..     168     339 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.098
                         HHHHHHHHHHHH--EEEEES-HH CS
              UPF0020 65 lkaeaeeearaelklygsDldrr 87
                         ++++ e++ +++ +++g+D+++r
  REBASE::M.Kpn62629I 40 MLDTQEQRDEKRKQIAGVDFKPR 62
                         67777888889999*****9887 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 1.1e-10
                          HHHHTT..--TTS-EEETT-TTSHHHH...HHHHHHTT--TTTT----SS..............HHHHHHHHHHHH--EEEEES-HHHHH CS
              UPF0020  20 lvrlag..wkpgepllDPmCGsGtilI...Eaallganiapgllrefvle..............lkaeaeeearaelklygsDldrrvvq 90 
                          +v++ +    +ge++ DP CG+G++l    E  l + +     + e  ++              l++ ++ +  ++  + g D+d  +++
  REBASE::M.Kpn62629I 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRDH-VDNNMFHGYDFDTTMLR 262
                          555554114579*************95333555555555544444444446666656655555433333322.244459*********** PP

                          HHHHHHHHTT-GGG.EEEEE--GGG--.....STTS---EEEE----------HH CS
              UPF0020  91 gareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskk 139
                           a  N+   gv++  i++++   +++      ++++ +++i++npP+  +l+++ 
  REBASE::M.Kpn62629I 263 IAAMNLIMHGVEEPdIHYQDTMSQSFStnfpqASRNAFNLILANPPFTGSLDEED 317
                          ***********98559999888887777776877889***********9999876 PP



Or compare REBASE::M.Kpn62629I to CDD or PaperBLAST