REBASE::M.LlaA17I has 516 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-10 27.5 0.1 4e-09 22.6 0.0 3.0 2 REBASE::M.LlaA17I
Domain annotation for each sequence (and alignments):
>> REBASE::M.LlaA17I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.2 0.0 0.036 0.036 75 105 .. 80 110 .. 44 126 .. 0.73
2 ! 22.6 0.0 4e-09 4e-09 9 133 .. 200 308 .. 195 314 .. 0.76
Alignments for each domain:
== domain 1 score: -0.2 bits; conditional E-value: 0.036
UPF0020 75 aelklygsDldrrvvqgareNaekagvgdli 105
+ + ++ s l+++vv++areN+ + ++i
REBASE::M.LlaA17I 80 KGYYIAPSQLFSNVVKTARENDDLNTKLKEI 110
344588889999*********9765544444 PP
== domain 2 score: 22.6 bits; conditional E-value: 4e-09
UPF0020 9 papLketLAa.alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaeka 99
p + ++ LA +++ ++++ ++++DP CGsG++l+ a ++++ + e ++g +++ + ar N
REBASE::M.LlaA17I 200 PQSVSALLAKiVMLGKDEQNKINKIYDPACGSGSLLLQARKQFSEHI--------------------IEEGFFGQEINMTTYNLARMNMFLH 271
555666666425666667777899***************99988888....................234499***************8766 PP
UPF0020 100 gvg.dl..iefsqadaakLrlkegevdvivtnpPYGe 133
+++ d+ i+ + + L+++++ +d+iv+npPY +
REBASE::M.LlaA17I 272 NINyDKfdIKRGDTLINPLHNDDKPFDAIVSNPPYSI 308
664344125555666889999999***********75 PP
Or compare REBASE::M.LlaA17I to CDD or PaperBLAST