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Align REBASE::M.Llu27648I to PF01170 (UPF0020)

REBASE::M.Llu27648I has 472 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
      2e-12   33.4   0.0    4.4e-12   32.2   0.0    1.6  1  REBASE::M.Llu27648I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Llu27648I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   4.4e-12   4.4e-12      18     177 ..     153     313 ..     149     323 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 4.4e-12
                          HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEE CS
              UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
                           ++v+l +  +ge+ +DP  G+G++lI a    ++          l+ +  a+++++++  +yg++l +   + a  Na    +++ i +
  REBASE::M.Llu27648I 153 ESMVELIKPLAGERVQDPAVGTGGFLINADRYIKTQTDD------LHDLPAAKQKFQKQEAFYGVELVPDTHRLALMNAMLHDIEGDILL 236
                          589************************997666666644......4477888888889999***************************** PP

                          EE--GGG--STTS---EEEE----------HHHH.HHHH.H......HHHHHHHHH-TT..-EEEEEESSHHHHHCC- CS
              UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkal.ekLY.s......eflrelkrvlrgggrlvlltsenkalekale 177
                           +          ++ dvi+tnpP+G + g  +a  ++++ +       fl+ + r lr ggr+++++++n  +e+ ++
  REBASE::M.Llu27648I 237 GDTLGPTGA-GLQKADVILTNPPFGTKKGGGGATrDDITfPtsnkqlVFLQHIYRGLRPGGRAAVVLPDNVLFEDGVG 313
                          996554333.44579***********9988877754443211222225888888999999999999999988887665 PP



Or compare REBASE::M.Llu27648I to CDD or PaperBLAST