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Align REBASE::M.MfoCT6III to PF01170 (UPF0020)

REBASE::M.MfoCT6III has 581 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    2.8e-13   36.1   0.0    7.6e-11   28.2   0.0    2.9  2  REBASE::M.MfoCT6III  


Domain annotation for each sequence (and alignments):
>> REBASE::M.MfoCT6III  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   7.6e-11   7.6e-11      15     133 ..      43     145 ..      37     163 .. 0.71
   2 !    3.8   0.0    0.0023    0.0023      14      38 ..     481     505 ..     478     506 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 7.6e-11
                          HHHHHHHHHTT--TTS-E..EETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-G CS
              UPF0020  15 tLAaalvrlagwkpgepl..lDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvg 102
                          +LAa + ++a    +++l  lDP CG G +l     ++ +  pg                  ++++l+g Dld++++q a + a +  ++
  REBASE::M.MfoCT6III  43 QLAAQIRNRAHESTESTLrvLDPACGDGELLFAVHRVAVELLPG------------------VKVSLVGYDLDNEAIQVASQRAAE--LA 112
                          56666666666555444322778888777775444444444443..................5688**************997755..55 PP

                          GGEEEEE--GGG--..STTS---EEEE------ CS
              UPF0020 103 dliefsqadaakLr..lkegevdvivtnpPYGe 133
                            +++ q d+ + r   ++g++d+++tnpPY +
  REBASE::M.MfoCT6III 113 IPVDWHQGDFLQARrdIPQGSFDAVITNPPYVR 145
                          56777777787777668899***********65 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0023
                          HHHHHHHHHHTT--TTS-EEETT-T CS
              UPF0020  14 etLAaalvrlagwkpgepllDPmCG 38 
                          e++A+ ++ +a+ k g +++D  CG
  REBASE::M.MfoCT6III 481 EEIAYLMLAVANSKLGLRFYDEVCG 505
                          89**********************9 PP



Or compare REBASE::M.MfoCT6III to CDD or PaperBLAST