REBASE::M.Msp1I has 687 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.1e-11 29.1 0.0 1.4e-10 27.3 0.0 1.9 1 REBASE::M.Msp1I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Msp1I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.3 0.0 1.4e-10 1.4e-10 29 131 .. 198 287 .. 187 290 .. 0.86
Alignments for each domain:
== domain 1 score: 27.3 bits; conditional E-value: 1.4e-10
UPF0020 29 gepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegev 122
g + +DP CGsG++ + a ++ + e+ + + ++ +yg ++ r+ v+ a+ N+ g+ ++i++ + + +++ g++
REBASE::M.Msp1I 198 GGKVYDPACGSGGMFVQSAEFINEHRK------------EL-QGTASDVYVYGQEKTRETVNLAKMNLAVNGLRGEIKQANTYYEDPHKSFGSF 278
56789***********99987777772............22.23446677******************************************** PP
UPF0020 123 dvivtnpPY 131
d +++npP+
REBASE::M.Msp1I 279 DYVLANPPF 287
********9 PP
Or compare REBASE::M.Msp1I to CDD or PaperBLAST