REBASE::M.Msp273IV has 517 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-14 40.0 0.0 3e-14 39.3 0.0 1.3 1 REBASE::M.Msp273IV
Domain annotation for each sequence (and alignments):
>> REBASE::M.Msp273IV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.3 0.0 3e-14 3e-14 18 147 .. 181 304 .. 176 358 .. 0.83
Alignments for each domain:
== domain 1 score: 39.3 bits; conditional E-value: 3e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.ief 107
+ +v+l+ ++g+ + DP CG+ ++l+ a+ ++ +p ll + v + ++ + g+D+d+ +++ a N gv+ i +
REBASE::M.Msp273IV 181 RLMVELTAPQPGDIICDPACGTAGFLVAAGEYLREHYPNLLHDPV-------MSKHFHNHLFHGFDFDNTMLRIASMNMLLHGVESPdIRY 264
669**********************************98875544.......4444466669**********************9854999 PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkalekLYse 147
++ a + +e+ + ++++npP+ +l+ +++ ++L +
REBASE::M.Msp273IV 265 RDSLAEEHAGDEETYTLVLANPPFAGSLDYENTAKDLLQI 304
99999988888889***************99999998764 PP
Or compare REBASE::M.Msp273IV to CDD or PaperBLAST