REBASE::M.Msp8I has 529 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.8e-14 37.8 0.0 1.5e-13 37.0 0.0 1.3 1 REBASE::M.Msp8I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Msp8I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.0 0.0 1.5e-13 1.5e-13 19 185 .. 182 351 .. 177 362 .. 0.77
Alignments for each domain:
== domain 1 score: 37.0 bits; conditional E-value: 1.5e-13
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear...aelklygsDldrrvvqgareNaekagvgdl.iefs 108
+v+++ k+ + + DP CG+ ++l+ a+ ++ p+l+ + +++r ++ + g+D+d+ +++ + N g++d i ++
REBASE::M.Msp8I 182 LMVEMTAPKPADIICDPACGTCGFLVAAGEYLRDNHPKLF----------IDRQTRdhfNTEMFHGFDFDSTMLRIGSMNMVLHGIEDPdIRYK 265
69******************************99999877..........4444443235555************************9648888 PP
UPF0020 109 qadaakLrlkegevdvivtnpPYGerlgskkalekLYs.........eflrelkrvlrgggrlvlltaenkalekaleeralrkvk 185
+ ++ +e+ + ++++npP+ +l+ + + ++L + f+ + + l+ ggr+++++++ + + +++a+rk+
REBASE::M.Msp8I 266 DSLSQEHAGDEDRYSLLLANPPFAGSLDYETTAKDLLQivktkktelLFMALFLKLLKPGGRAAVIVPDGVLFGSSTAHKAIRKML 351
8777776678889***************9999999876222222222355566677777777777777777777777777666665 PP
Or compare REBASE::M.Msp8I to CDD or PaperBLAST