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Align REBASE::M.Mva1261III to PF01170 (UPF0020)

REBASE::M.Mva1261III has 518 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    4.1e-12   32.3   0.0      7e-12   31.6   0.0    1.4  1  REBASE::M.Mva1261III  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Mva1261III  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0     7e-12     7e-12      20     140 ..     173     307 ..     168     371 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 7e-12
                           HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.............HHHHHHHHHHHH--EEEEES-HHHHHHHHHH CS
               UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle.............lkaeaeeearaelklygsDldrrvvqgareN 95 
                           +v++++ +p+e+  DP CG+ ++l  + +   n+ +     f  +             l++e + +++ e  ++g+D+d+ +++ +  N
  REBASE::M.Mva1261III 173 IVEMTEPQPTETVCDPACGTAGFLA-RTMEYLNRTHSSE--FG-KftdddgnmiysgdLLEEYRSHIN-EKMFWGFDFDSTMLRVSSMN 256
                           799*****************99985.5566666664332..33.246789999988776666666555.445***************** PP

                           HHHTT-GG.GEEEEE--GGG--.....STTS---EEEE----------HHH CS
               UPF0020  96 aekagvgd.liefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
                               gv++  i +++  ++++      ++e+ +dvi++npP+  +l++ + 
  REBASE::M.Mva1261III 257 MLLHGVSGaNILYQDSLNKSILdrypaQAENFFDVILANPPFKGSLDESNI 307
                           **999976257777777777656888777889**********999988765 PP



Or compare REBASE::M.Mva1261III to CDD or PaperBLAST