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Align REBASE::M.Nbr352I to PF01170 (UPF0020)

REBASE::M.Nbr352I has 590 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.9e-12   33.4   0.1    2.4e-11   29.8   0.0    2.6  2  REBASE::M.Nbr352I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Nbr352I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   2.4e-11   2.4e-11      69     143 ..      63     138 ..      16     147 .. 0.77
   2 ?   -0.4   0.0     0.042     0.042      14      38 ..     505     529 ..     502     530 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.4e-11
                        HHHHHH...HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE----------HHHHHH CS
            UPF0020  69 aeeear...aelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalek 143
                        a e  r   ++++l+g Dld+++++ ar  a +ag++  +++ +    + +l+  ++d+++tnpPY +  +  +a  +
  REBASE::M.Nbr352I  63 AAE--RlpgTRIELIGYDLDPAALRVARARAGAAGIAVDWQVGDFLTVAAELAAVSFDAVITNPPYVRTQQLGGATAQ 138
                        222..13357899***********************9888777766666666777***********887766666644 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.042
                        HHHHHHHHHHTT--TTS-EEETT-T CS
            UPF0020  14 etLAaalvrlagwkpgepllDPmCG 38 
                        e+LA+ l+ +a+   g +++D  CG
  REBASE::M.Nbr352I 505 EQLAYLLMGVANSALGLRFYDTVCG 529
                        79**********************9 PP



Or compare REBASE::M.Nbr352I to CDD or PaperBLAST