REBASE::M.Ncy6504III has 546 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.7e-15 41.9 0.0 2.1e-13 36.6 0.0 2.5 2 REBASE::M.Ncy6504III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Ncy6504III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.6 0.0 2.1e-13 2.1e-13 7 134 .. 16 125 .. 10 140 .. 0.83
2 ! 2.4 0.0 0.0061 0.0061 15 38 .. 460 483 .. 458 484 .. 0.95
Alignments for each domain:
== domain 1 score: 36.6 bits; conditional E-value: 2.1e-13
UPF0020 7 ngpapLketLAaalvr.lagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgare 94
+ pa L LA v+ l g+ + +++DP CG G++l+ a + +++ pg ++l g Dld+ +++ ar
REBASE::M.Ncy6504III 16 T-PADLARFLAERVVEhLDGAGGELRIIDPACGDGALLLAAHRVLSERRPGVA------------------VRLTGYDLDQDALEVAR- 84
4.78888888877775266778889**************99999999999877..................779*************9. PP
UPF0020 95 NaekagvgdliefsqadaakLr..lkegevdvivtnpPYGer 134
a++ag+g ++e+ + d+ + r l+++ +d+++tnpPY +
REBASE::M.Ncy6504III 85 -ARAAGLGVTVELHTGDFLDARtdLDTARFDAVITNPPYVRV 125
.677999999999999999999888999***********754 PP
== domain 2 score: 2.4 bits; conditional E-value: 0.0061
UPF0020 15 tLAaalvrlagwkdgepllDPmCG 38
+LA+ ++ +a+ + g +++D CG
REBASE::M.Ncy6504III 460 ELAYLMLAVANSRLGLRFYDEVCG 483
79*********************9 PP
Or compare REBASE::M.Ncy6504III to CDD or PaperBLAST