REBASE::M.Nfa11134I has 558 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-10 26.5 0.0 1.6e-09 23.8 0.0 2.3 2 REBASE::M.Nfa11134I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Nfa11134I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.8 0.0 1.6e-09 1.6e-09 32 133 .. 45 128 .. 15 145 .. 0.78
2 ? -1.2 0.0 0.077 0.077 126 147 .. 484 505 .. 474 516 .. 0.66
Alignments for each domain:
== domain 1 score: 23.8 bits; conditional E-value: 1.6e-09
UPF0020 32 llDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkege 121
lDP CG G +l+ +a++ pg + +++ g Dld++++++ar a +ag+ ++ + rl g
REBASE::M.Nfa11134I 45 VLDPACGEGELLLALHREAARVRPG------------------VPIRMTGYDLDESALARARVRAAAAGMVADWHTGDFLSEVARLGPGR 116
5566666666665333333333333..................447799***************************99887777777889 PP
UPF0020 122 vdvivtnpPYGe 133
+d+i+tnpPY +
REBASE::M.Nfa11134I 117 FDAIITNPPYVR 128
**********65 PP
== domain 2 score: -1.2 bits; conditional E-value: 0.077
UPF0020 126 vtnpPYGerlgskkalekLYse 147
v+n P G+r ++ ++LYs
REBASE::M.Nfa11134I 484 VANSPLGKRYYDAVCGNRLYSG 505
5677777777777777777765 PP
Or compare REBASE::M.Nfa11134I to CDD or PaperBLAST