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Align REBASE::M.Nfa11134I to PF01170 (UPF0020)

REBASE::M.Nfa11134I has 558 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    3.1e-10   26.2   0.0    2.1e-09   23.5   0.0    2.3  2  REBASE::M.Nfa11134I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Nfa11134I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.1e-09   2.1e-09      32     133 ..      45     128 ..      16     145 .. 0.78
   2 ?   -1.2   0.0     0.079     0.079     126     147 ..     484     505 ..     474     516 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.1e-09
                          EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS- CS
              UPF0020  32 llDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkege 121
                           lDP CG G +l+     +a++ pg                  + +++ g Dld++++++ar  a +ag+   ++  +      rl  g 
  REBASE::M.Nfa11134I  45 VLDPACGEGELLLALHREAARVRPG------------------VPIRMTGYDLDESALARARVRAAAAGMVADWHTGDFLSEVARLGPGR 116
                          4566666666655333333333333..................447799***************************99877766777889 PP

                          --EEEE------ CS
              UPF0020 122 vdvivtnpPYGe 133
                          +d+i+tnpPY +
  REBASE::M.Nfa11134I 117 FDAIITNPPYVR 128
                          **********65 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.079
                          EE----------HHHHHHHHHH CS
              UPF0020 126 vtnpPYGerlgskkalekLYse 147
                          v+n P G+r  ++   ++LYs 
  REBASE::M.Nfa11134I 484 VANSPLGKRYYDAVCGNRLYSG 505
                          5677777777777777777765 PP



Or compare REBASE::M.Nfa11134I to CDD or PaperBLAST