REBASE::M.Nfa11134II has 514 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-11 30.2 0.0 3.2e-11 29.4 0.0 1.3 1 REBASE::M.Nfa11134II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Nfa11134II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.4 0.0 3.2e-11 3.2e-11 20 146 .. 178 298 .. 172 356 .. 0.74
Alignments for each domain:
== domain 1 score: 29.4 bits; conditional E-value: 3.2e-11
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.ief 107
+v + k+g++++DP +G+ ++l+ a + + ++ + a ++ ++ + g+D+d+ +++ + N g+++ i +
REBASE::M.Nfa11134II 178 MVHMMAPKPGDTIVDPASGTCGFLVAASEYMRAHHADAI-------NSGAGKHHYHHKMFHGFDFDNTMLRIGSMNMLLHGIEQPdIRY 259
999999*******************88755444443333.......2333333334555***********************9854999 PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkalekLYs 146
++ a + + + + + ++++npP+ +l+ +++ ++L +
REBASE::M.Nfa11134II 260 RDSLAEANTGDAEAYSLVLANPPFAGSLDYENTAKDLQQ 298
99888888866668***************9999988865 PP
Or compare REBASE::M.Nfa11134II to CDD or PaperBLAST