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Align REBASE::M.Pae63III to PF01170 (UPF0020)

REBASE::M.Pae63III has 796 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    4.2e-10   25.8   0.0    2.2e-09   23.4   0.0    2.1  2  REBASE::M.Pae63III  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Pae63III  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.2e-09   2.2e-09      31     140 ..     226     321 ..     222     325 .. 0.84
   2 ?   -1.7   0.0      0.11      0.11      87     119 ..     731     765 ..     728     773 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.2e-09
                         -EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS CS
             UPF0020  31 pllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkeg 120
                         +++DP CGsG++l E     ++ +p               + ++++++lyg +++ +  + +++     + +d  +++     ++   + +
  REBASE::M.Pae63III 226 TIYDPACGSGGMLTESQNFIEEKYPA--------------QGIQRDIHLYGKEINDETYAICKSDMM-IKGNDPAHIRPGSTLSVDeFAGS 301
                         79*************99988888873..............45789999**************99875.55678888988888888843344 PP

                         ---EEEE----------HHH CS
             UPF0020 121 evdvivtnpPYGerlgskka 140
                          +d +++npPYG++  s+++
  REBASE::M.Pae63III 302 RFDFMLSNPPYGKSWASEQK 321
                         8*************999887 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.11
                         HHHHHHHHHHHHTT-GGGEEEEE-..-GGG--STT CS
             UPF0020  87 rvvqgareNaekagvgdliefsqa..daakLrlke 119
                          +v+ a  N+e+ ++g +i+f++   +++ Lr +e
  REBASE::M.Pae63III 731 PHVEEAWINLESVKIGYEISFNKYfyKHQPLRSME 765
                         58999***************998522556666444 PP



Or compare REBASE::M.Pae63III to CDD or PaperBLAST