REBASE::M.Pae63III has 796 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-10 26.1 0.0 1.9e-09 23.6 0.0 2.2 2 REBASE::M.Pae63III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Pae63III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.6 0.0 1.9e-09 1.9e-09 31 140 .. 226 321 .. 222 325 .. 0.84
2 ? -1.5 0.0 0.092 0.092 87 119 .. 731 765 .. 728 773 .. 0.74
Alignments for each domain:
== domain 1 score: 23.6 bits; conditional E-value: 1.9e-09
UPF0020 31 pllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkeg 120
+++DP CGsG++l E ++ +p + ++++++lyg +++ + + +++ + +d +++ ++ + +
REBASE::M.Pae63III 226 TIYDPACGSGGMLTESQNFIEEKYPA--------------QGIQRDIHLYGKEINDETYAICKSDMM-IKGNDPAHIRPGSTLSVDeFAGS 301
79*************99988888873..............45789999**************99875.55678889998888888843344 PP
UPF0020 121 evdvivtnpPYGerlgskka 140
+d +++npPYG++ s+++
REBASE::M.Pae63III 302 RFDFMLSNPPYGKSWASEQK 321
8*************999886 PP
== domain 2 score: -1.5 bits; conditional E-value: 0.092
UPF0020 87 rvvqgareNaekagvgdliefsqa..daakLrlke 119
+v+ a N+e+ ++g +i+f++ +++ Lr +e
REBASE::M.Pae63III 731 PHVEEAWINLESVKIGYEISFNKYfyKHQPLRSME 765
58999***************998522566666444 PP
Or compare REBASE::M.Pae63III to CDD or PaperBLAST