REBASE::M.Pae63IV has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.5e-11 28.0 0.0 2.1e-10 26.8 0.0 1.6 1 REBASE::M.Pae63IV
Domain annotation for each sequence (and alignments):
>> REBASE::M.Pae63IV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.8 0.0 2.1e-10 2.1e-10 20 132 .. 174 279 .. 170 290 .. 0.75
Alignments for each domain:
== domain 1 score: 26.8 bits; conditional E-value: 2.1e-10
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs..q 109
+vr+ + k +e+ +DP CG+G++l ++++ ++ ++ae e +++++g+++++ a +N g++ +++ +
REBASE::M.Pae63IV 174 MVRMVDPKLDEKVMDPACGTGGFLT--CTIEHKRSR---------YVKTAEDERVLQASIFGVEKKPLPHLLATTNMILHGIEVPSQIKhdN 254
9***********************5..777777662.........23456666668888******987666677776666666555555005 PP
UPF0020 110 adaakLr..lkegevdvivtnpPYG 132
+ L + + vd iv+npP+G
REBASE::M.Pae63IV 255 TLSRPLIswGPGERVDCIVANPPFG 279
55556657766679**********9 PP
Or compare REBASE::M.Pae63IV to CDD or PaperBLAST