PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.PaeLWI to PF01170 (UPF0020)

REBASE::M.PaeLWI has 524 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------         -----------
    2.3e-12   33.2   0.0    4.4e-12   32.2   0.0    1.5  1  REBASE::M.PaeLWI  


Domain annotation for each sequence (and alignments):
>> REBASE::M.PaeLWI  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   4.4e-12   4.4e-12      18     141 ..     179     316 ..     174     371 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 4.4e-12
                       HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS..........HHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT CS
           UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle..........lkaeaeeearaelklygsDldrrvvqgareNaekag 100
                        a+++l   +p++++ DP CG+ ++l  + +   n+++     +++           l  e  ++  + + ++g+D+d  +++ +  N    g
  REBASE::M.PaeLWI 179 DAMIELIAPQPTDVICDPACGTAGFLA-RTMEYLNRVHSSPEGTFSDedgnlhysgdL-LEPYRQHINSQMFWGFDFDTTMLRVSSMNMMLHG 269
                       599**********************85.667777888665555555488889887743.333334445666********************** PP

                       -GG.GEEEEE--GGG--.....STTS---EEEE----------HHHH CS
           UPF0020 101 vgd.liefsqadaakLr.....lkegevdvivtnpPYGerlgskkal 141
                       v++  i +++   ++++     ++++ +dv+++npP+  +l++++++
  REBASE::M.PaeLWI 270 VNGaNIRYQDSLSKSIKehyprQEQNFFDVVLANPPFKGSLDETNTN 316
                       976379**********999886555689*********9999998776 PP



Or compare REBASE::M.PaeLWI to CDD or PaperBLAST