REBASE::M.PbaD4II has 418 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-13 36.0 0.0 3e-09 22.9 0.0 2.3 2 REBASE::M.PbaD4II
Domain annotation for each sequence (and alignments):
>> REBASE::M.PbaD4II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.9 0.0 3e-09 3e-09 8 54 .. 29 74 .. 21 104 .. 0.82
2 ! 10.7 0.0 1.7e-05 1.7e-05 112 137 .. 237 260 .. 219 277 .. 0.74
Alignments for each domain:
== domain 1 score: 22.9 bits; conditional E-value: 3e-09
UPF0020 8 gpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallgania 54
+pa + +++A l++ g + ++l+DP CGsGt l+Ea + g n++
REBASE::M.PbaD4II 29 YPAMMIPQIANRLIKYYGSD-AQQLFDPYCGSGTSLVEANVNGINAV 74
68999999999999999975.5789**************99999987 PP
== domain 2 score: 10.7 bits; conditional E-value: 1.7e-05
UPF0020 112 aakLrlkegevdvivtnpPYGerlgs 137
+ lk++e+d++vt pPYG++ ++
REBASE::M.PbaD4II 237 VEP--LKSSEIDLVVTSPPYGDSRTT 260
334..45779***********98665 PP
Or compare REBASE::M.PbaD4II to CDD or PaperBLAST