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Align REBASE::M.PbaVA2I to PF01170 (UPF0020)

REBASE::M.PbaVA2I has 578 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
      3e-10   26.2   0.0      6e-10   25.3   0.0    1.5  1  REBASE::M.PbaVA2I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.PbaVA2I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0     6e-10     6e-10      36     143 ..      66     177 ..      58     220 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 6e-10
                        T-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.......HH--..EEEEES-HHHHHHHHHHHHHTT-G.GGEEEEE--GGG--. CS
            UPF0020  36 mCGsGtilIEaallganiapgllrefvlelkaeaeeear.......aelk..lygsDldrrvvqgareNaekagvg.dliefsqadaakLr. 116
                         CG G +l+Ea  + ++ +    +++++elk++  +e         + ++  +yg+D d+ +++  ++ +++ + + +  +f+     +L+ 
  REBASE::M.PbaVA2I  66 SCGCGNFLLEAYDIINDLI----KQNIYELKQKYGQEYWdddsihnNIISncIYGADVDKDAIEILKKSLKEKNKTfKYTNFNLYHCDSLKk 153
                        5**********99999988....56667766666555443444554444479************9999998776651456677777778886 PP

                        STTS---EEEE----------HHHHHH CS
            UPF0020 117 lkegevdvivtnpPYGerlgskkalek 143
                          e+++d i++npPY    g+kk   +
  REBASE::M.PbaVA2I 154 TWEAKFDYIIGNPPYV---GQKKLTTE 177
                        66779**********4...33333333 PP



Or compare REBASE::M.PbaVA2I to CDD or PaperBLAST