REBASE::M.PbaVA2I has 578 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-10 26.2 0.0 6.4e-10 25.1 0.0 1.5 1 REBASE::M.PbaVA2I
Domain annotation for each sequence (and alignments):
>> REBASE::M.PbaVA2I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.1 0.0 6.4e-10 6.4e-10 36 143 .. 66 177 .. 58 221 .. 0.71
Alignments for each domain:
== domain 1 score: 25.1 bits; conditional E-value: 6.4e-10
UPF0020 36 mCGsGtilIEaallganiapgllrefvyelkaeaeeear.......aelk..lygsDldrrvvqgareNaekagvg.dliefsqadaakLr. 116
CG G +l+Ea + ++ + ++++yelk++ +e + ++ +yg+D d+ +++ ++ +++ + + + +f+ +L+
REBASE::M.PbaVA2I 66 SCGCGNFLLEAYDIINDLI----KQNIYELKQKYGQEYWdddsihnNIISncIYGADVDKDAIEILKKSLKEKNKTfKYTNFNLYHCDSLKk 153
5**********99999998....56667766665554443433554444478************9999998776661455677777778886 PP
UPF0020 117 lkegevdvivtnpPYGerlgskkalek 143
e+++d i++npPY g+kk +
REBASE::M.PbaVA2I 154 TWEAKFDYIIGNPPYV---GQKKLTTE 177
56779**********4...33333333 PP
Or compare REBASE::M.PbaVA2I to CDD or PaperBLAST