PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Pdo1047II to PF01170 (UPF0020)

REBASE::M.Pdo1047II has 472 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    2.1e-15   43.0   0.0    5.3e-15   41.7   0.0    1.6  1  REBASE::M.Pdo1047II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Pdo1047II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   5.3e-15   5.3e-15      18     187 ..     160     328 ..     156     336 .. 0.75

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 5.3e-15
              UPF0020  18 aalvrlagwkdgepllDPmCGsGtilIEaa.llganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.i 105
                           a+v   + + ge+  DP CG+G++l+ a   ++ + a             + ++++ ++  l g+D+ + vv+ a  N+   g+g    
  REBASE::M.Pdo1047II 160 QAMVDCINPQMGETVCDPACGTGGFLLTAYdYMKGQSAS------------KEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDrS 237
                          79************************9886245555552............223333366669**********************86505 PP

              UPF0020 106 efsqadaakLr.lkegevdvivtnpPYGerlgskkal..ekLYse.......flrelkrvlrgggrlvlltaenkalekaleer.alrkv 184
                           +++ d    + +++  vdvi++npP+G r     ++   ++Y e       fl+ +  +l++ggr+++++++n  +e+ ++e  + r  
  REBASE::M.Pdo1047II 238 PIVCEDSL--EkEPSTLVDVILANPPFGTRPAGSVDInrPDFYVEtknnqlnFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETiRKRLL 325
                          56665555..4458889************965555543678997533344448999999999***********99999888776555555 PP

              UPF0020 185 kek 187
                          + +
  REBASE::M.Pdo1047II 326 QDF 328
                          555 PP



Or compare REBASE::M.Pdo1047II to CDD or PaperBLAST