REBASE::M.Pfe13482III has 498 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-16 44.9 0.0 1.1e-15 43.9 0.0 1.5 1 REBASE::M.Pfe13482III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Pfe13482III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 43.9 0.0 1.1e-15 1.1e-15 18 138 .. 179 287 .. 175 299 .. 0.89
Alignments for each domain:
== domain 1 score: 43.9 bits; conditional E-value: 1.1e-15
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdli 105
+ +v++ + + ge+ +DP+CGsG++l+Ea + + a + +e ++ e ++yg +l++++ a N gv+ +
REBASE::M.Pfe13482III 179 RFMVKVVDPEIGETVFDPFCGSGGFLVEAYNHAYEKA------------KSVEDLKKLEESFYGQELKPQAYLIASMNTLLHGVNAKL 254
5699*************************77777777............456666677788*************************** PP
UPF0020 106 efsqadaakLrlkegevdvivtnpPYGerlgsk 138
+ + +L+ + + + +i+tnpP+G ++++
REBASE::M.Pfe13482III 255 TKTDTFSEDLHSPGELYKIILTNPPFGGKIKES 287
***********88889************99875 PP
Or compare REBASE::M.Pfe13482III to CDD or PaperBLAST