REBASE::M.Pfl300I has 471 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.4e-13 34.6 0.0 4.3e-12 32.3 0.0 2.0 2 REBASE::M.Pfl300I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Pfl300I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.3 0.0 4.3e-12 4.3e-12 18 143 .. 153 264 .. 149 323 .. 0.77
2 ? -1.0 0.0 0.067 0.067 127 150 .. 386 409 .. 366 418 .. 0.73
Alignments for each domain:
== domain 1 score: 32.3 bits; conditional E-value: 4.3e-12
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdliefs 108
++vrl++ k ge ++DP GsG++l+ a +++a +++ + + k g+++ ++ + + N g++ +i +
REBASE::M.Pfl300I 153 EVIVRLTQPKIGELIQDPSIGSGGFLVAADEFIRRAA--------------TKKQYKaNPPKYQGVEIEKNTRRICLMNTFLHGLDAQIIYG 230
679************************5555555555..............2333332344478**************************** PP
UPF0020 109 qadaakLrlkegevdvivtnpPYGerlgskkalek 143
+a + + e d+i++npP+G + gsk++l+k
REBASE::M.Pfl300I 231 DALTDDASALE-AADLILANPPFGSKAGSKRSLRK 264
*9999999666.79*****************9953 PP
== domain 2 score: -1.0 bits; conditional E-value: 0.067
UPF0020 127 tnpPYGerlgskkalekLYseflr 150
++ PYG++ + + ++ ++ f r
REBASE::M.Pfl300I 386 GDDPYGKSSRKDQGVNGCFRRFTR 409
699****99998888777777765 PP
Or compare REBASE::M.Pfl300I to CDD or PaperBLAST