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Align REBASE::M.PfrJS9II to PF01170 (UPF0020)

REBASE::M.PfrJS9II has 831 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    3.2e-10   26.1   0.0    6.4e-10   25.2   0.0    1.4  1  REBASE::M.PfrJS9II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.PfrJS9II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   6.4e-10   6.4e-10      29     136 ..     328     440 ..     317     451 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 6.4e-10
                         TS-EEETT-TTSHHHHHHHHHHTT--..TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG-- CS
             UPF0020  29 gepllDPmCGsGtilIEaallgania..pgllrefvlelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdliefsqadaakLr 116
                         + + lDP CG+G++l+   ll+++ +    ll+ +++ + ++   +++ +++ + gsD ++ v   a+ N   ag g++  +++      +
  REBASE::M.PfrJS9II 328 DIRVLDPACGTGGFLVY--LLKESLVqvDDLLKARKITKANRDDLAEKlKRAVFHGSDANEGVASSAKMNMIIAGDGHTNIVRENSLL--P 414
                         55789**********95..4444444003344444444444444444467888*********************99998777775433..3 PP

                         ......STTS---EEEE--------- CS
             UPF0020 117 ......lkegevdvivtnpPYGerlg 136
                                 ++++d+i tnpP+G   g
  REBASE::M.PfrJS9II 415 rasvwpMGRADYDLIMTNPPFGTTEG 440
                         23455677889***********8655 PP



Or compare REBASE::M.PfrJS9II to CDD or PaperBLAST