REBASE::M.PfrJS9II has 831 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.9e-10 26.3 0.0 5.8e-10 25.3 0.0 1.4 1 REBASE::M.PfrJS9II
Domain annotation for each sequence (and alignments):
>> REBASE::M.PfrJS9II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 25.3 0.0 5.8e-10 5.8e-10 29 136 .. 328 440 .. 317 451 .. 0.71
Alignments for each domain:
== domain 1 score: 25.3 bits; conditional E-value: 5.8e-10
UPF0020 29 gepllDPmCGsGtilIEaallgania..pgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdliefsqadaakLr 116
+ + lDP CG+G++l+ ll+++ + ll+ +++ + ++ +++ +++ + gsD ++ v a+ N ag g++ +++ +
REBASE::M.PfrJS9II 328 DIRVLDPACGTGGFLVY--LLKESLVqvDDLLKARKITKANRDDLAEKlKRAVFHGSDANEGVASSAKMNMIIAGDGHTNIVRENSLL--P 414
55789**********95..4444444003344444444444444444467888*********************99998777775433..3 PP
UPF0020 117 ......lkegevdvivtnpPYGerlg 136
++++d+i tnpP+G g
REBASE::M.PfrJS9II 415 rasvwpMGRADYDLIMTNPPFGTTEG 440
23455677889***********8655 PP
Or compare REBASE::M.PfrJS9II to CDD or PaperBLAST