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Align REBASE::M.PgaP129IV to PF01170 (UPF0020)

REBASE::M.PgaP129IV has 630 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    3.8e-12   32.4   0.0    5.5e-11   28.6   0.0    2.1  1  REBASE::M.PgaP129IV  


Domain annotation for each sequence (and alignments):
>> REBASE::M.PgaP129IV  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   5.5e-11   5.5e-11      18     137 ..     142     247 ..     137     256 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 5.5e-11
                          HHHHHHTT--TTS-EEETT-TTSHHHHHHHH..HHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGE CS
              UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaal..lganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdli 105
                          +a+v + + ++ge+++DP CG+G++l  aal  l+++ apg                      l+g+D+d+ +   a    e    ++++
  REBASE::M.PgaP129IV 142 RAMVSILEPHAGEMIIDPACGTGGFL-SAALdyLQEENAPG---------------------TLVGIDKDSDLSLLASALSEVHSGDQKV 209
                          89***********************8.56662233344443.....................4799999998877777777777778888 PP

                          EEEE--GGG--......STTS---EEEE---------- CS
              UPF0020 106 efsqadaakLr......lkegevdvivtnpPYGerlgs 137
                          ++++a+  +L        + ge+d+++tnpP+G ++g 
  REBASE::M.PgaP129IV 210 QVVNANSLSLSalsdagVQFGEYDLVLTNPPFGSKIGI 247
                          888888888887767777889*************9985 PP



Or compare REBASE::M.PgaP129IV to CDD or PaperBLAST