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Align REBASE::M.PinDOK11I to PF01170 (UPF0020)

REBASE::M.PinDOK11I has 472 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
      3e-12   32.7   0.0      7e-12   31.6   0.0    1.5  1  REBASE::M.PinDOK11I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.PinDOK11I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0     7e-12     7e-12      17     177 ..     152     306 ..     149     318 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 7e-12
                          HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEE CS
              UPF0020  17 AaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
                            a+vr+ + + ge+++DP  G+ ++lI a +  +n+              +  + ar+  ++ +++++    + +  N    g+++++ 
  REBASE::M.PinDOK11I 152 VDAMVRVLQPDLGETIQDPAAGTAGFLISAQTYITNRH-------------NSSAYARNPPRFQAVEIEGDTYRLCLMNIFLHGMDGRVI 228
                          569*****************************999999.............3445566666699*************************9 PP

                          EEE--GGG--STTS---EEEE----------HHHH.HHHHHH.......HHHHHHHH-TT..-EEEEEESSHHHHHCC- CS
              UPF0020 107 fsqadaakLrlkegevdvivtnpPYGerlgskkal.ekLYse.......flrelkrvlrgggrlvlltsenkalekale 177
                            +a   + ++ + + dvi++npP+G ++g ++a  ++L+         fl+++ + l  +gr+++++++n  +e+ ++
  REBASE::M.PinDOK11I 229 HGDALTHDAEELT-SPDVIIANPPFGTSVGGARARrDDLHFRtsnkqllFLQRIVQSLPANGRAAVVLPDNVLFEENVG 306
                          9999999999666.89****************99988998542223334788888999999999999999999988665 PP



Or compare REBASE::M.PinDOK11I to CDD or PaperBLAST