REBASE::M.PinDOK11I has 472 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-12 33.3 0.0 4.5e-12 32.2 0.0 1.5 1 REBASE::M.PinDOK11I
Domain annotation for each sequence (and alignments):
>> REBASE::M.PinDOK11I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.2 0.0 4.5e-12 4.5e-12 18 177 .. 153 306 .. 149 318 .. 0.85
Alignments for each domain:
== domain 1 score: 32.2 bits; conditional E-value: 4.5e-12
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
a+vr+ + + ge+++DP G+ ++lI a + +n+ + + ar+ ++ ++++ + + N g+++++
REBASE::M.PinDOK11I 153 DAMVRVLQPDLGETIQDPAAGTAGFLISAQTYITNRH-------------NSSAYARNPPRFQAVEIEGDTYRLCLMNIFLHGMDGRVIH 229
69*****************************999999.............3445566666699**************************9 PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkal.ekLYse.......flrelkrvlrgggrlvlltaenkalekale 177
+a + ++ + + dvi++npP+G ++g ++a ++L+ fl+++ + l +gr+++++++n +e+ ++
REBASE::M.PinDOK11I 230 GDALTHDAEELT-SPDVIIANPPFGTSVGGARARrDDLHFRtsnkqllFLQRIVQSLPANGRAAVVLPDNVLFEENVG 306
999999999666.89****************99988998542223334788888889999999999999999988665 PP
Or compare REBASE::M.PinDOK11I to CDD or PaperBLAST