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Align REBASE::M.PinT5III to PF01170 (UPF0020)

REBASE::M.PinT5III has 403 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    1.1e-10   27.7   0.0      1e-09   24.5   0.0    2.3  2  REBASE::M.PinT5III  


Domain annotation for each sequence (and alignments):
>> REBASE::M.PinT5III  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.029     0.029     115     131 ..      15      33 ..       2      39 .. 0.75
   2 !   24.5   0.0     1e-09     1e-09      27      65 ..     230     283 ..     224     347 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.029
                         --..STTS---EEEE---- CS
             UPF0020 115 Lr..lkegevdvivtnpPY 131
                         L    ++++vd+i  +pP+
  REBASE::M.PinT5III  15 LLldMPRESVDLIYVDPPF 33 
                         44446788**********8 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1e-09
                         -TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS...............H CS
             UPF0020  27 kpgepllDPmCGsGtilIEaallganiapgllrefvle...............l 65 
                         ++g++ lDP+CGsGt l+ a ll++n + + + ++++e               l
  REBASE::M.PinT5III 230 DEGDVVLDPFCGSGTTLVAAQLLKRNSIGIDISSEAIEltkdrlknpvvtssaL 283
                         6899************************88777777776444444444433331 PP



Or compare REBASE::M.PinT5III to CDD or PaperBLAST