REBASE::M.PinT5III has 403 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.8e-11 28.0 0.0 8.9e-10 24.7 0.0 2.3 2 REBASE::M.PinT5III
Domain annotation for each sequence (and alignments):
>> REBASE::M.PinT5III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.3 0.0 0.026 0.026 115 131 .. 15 33 .. 2 39 .. 0.75
2 ! 24.7 0.0 8.9e-10 8.9e-10 27 65 .. 230 283 .. 224 347 .. 0.72
Alignments for each domain:
== domain 1 score: 0.3 bits; conditional E-value: 0.026
UPF0020 115 Lr..lkegevdvivtnpPY 131
L ++++vd+i +pP+
REBASE::M.PinT5III 15 LLldMPRESVDLIYVDPPF 33
44446788**********9 PP
== domain 2 score: 24.7 bits; conditional E-value: 8.9e-10
UPF0020 27 kdgepllDPmCGsGtilIEaallganiapgllrefvye...............l 65
++g++ lDP+CGsGt l+ a ll++n + + + ++++e l
REBASE::M.PinT5III 230 DEGDVVLDPFCGSGTTLVAAQLLKRNSIGIDISSEAIEltkdrlknpvvtssaL 283
6899************************88887777776444444444444431 PP
Or compare REBASE::M.PinT5III to CDD or PaperBLAST