REBASE::M.Pme0300III has 473 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-13 36.8 0.0 4e-13 35.6 0.0 1.6 1 REBASE::M.Pme0300III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Pme0300III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 35.6 0.0 4e-13 4e-13 18 179 .. 160 319 .. 156 336 .. 0.75
Alignments for each domain:
== domain 1 score: 35.6 bits; conditional E-value: 4e-13
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
a++ + k ge+ DP CG+G++l+ a + +++ + ++ ++ l g+D+ + vv+ a N+ g+g +
REBASE::M.Pme0300III 160 QAMIDCLQPKIGETVCDPACGTGGFLLAAYDYMKGQS-----------QDKGKLDFLNDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 237
6899999999***************986543333333...........4666778889999***********************87655 PP
UPF0020 107 .fsqadaakLr.lkegevdvivtnpPYGerlgskkal..ekLYse.......flrelkrvlrgggrlvlltaenkalekaleer 179
+ + d L+ ++e vdvi++npP+G r ++ ++Y e fl+ + +l+ ggr+++++++n +e ++e
REBASE::M.Pme0300III 238 pIACEDS--LEkEPETLVDVILANPPFGTRPAGSVDInrPDFYVEtknnqlnFLQHMMLMLKDGGRAAVVLPDNVLFEGGAGET 319
1444444..55468889************9655554436678865333333378888888999999999999998888766655 PP
Or compare REBASE::M.Pme0300III to CDD or PaperBLAST